• Achromobacter sp.
• Acinetobacter baumanii (Complexe)
• Actinobacillus sp.
• Actinomyces sp.
• Aerococcus sp.
• Aeromonas sp.
• Afipia sp.
• Aggregatibacter sp.
• Alcaligenes sp.
• Anaerococcus sp.
• Anaplasma sp.
• Arthrobacter sp.

• Bacillus anthracis
• Bacillus cereus
• Bacillus sp. (autres espèces)
• Bacteroides fragilis (Complexe)
• Bartonella sp.
• Bifidobacterium sp.
• Bordetella pertussis/parapertussis
• Borreliella burgdorferi
• Brevundimonas sp.
• Brucella sp.
• Burkholderia cepacia (Complexe)
• Burkholderia gladioli
• Burkholderia pseudomallei (Complexe)

• Campylobacter sp.
• Capnocytophaga sp.
• Cardiobacterium spp.
• Cedecea sp.
• Chlamydia psittaci
• Chlamydia trachomatis
• Chlamydophila pneumoniae
• Chryseobacterium sp.
• Citrobacter sp.
• Clostridium botulinum
• Clostridium difficile
• Clostridium perfringens
• Clostridium tetani
• Corynebacterium amycolatum
• Corynebacterium diphteriae
• Corynebacterium jeikeium
• Corynebacterium kroppenstedtii
• Corynebacterium ulcerans
• Corynebacterium urealyticum
• Corynebacterium spp. des flores commensales
• Coxiella burnetii
• Cronobacter sp.
• Cutibacterium acnes

• Dermabacter hominis

• Ehrlichia sp.
• Eikenella corrodens
• Empedobacter sp.
• Enterobacter cloacae (Complexe)
• Enterococcus sp.
• Erysipelothrix sp.
• Escherichia coli
• Eubacterium sp.
• Ewingella americana

• Finegoldia magna
• Francisella tularensis
• Fusobacterium sp.

• Gardnerella vaginalis
• Globicatella sp.

• Haemophilus influenzae
• Hafnia alvei
• Helicobacter pylori

• Kerstersia gyiorum
• Kingella sp.
• Klebsiella aerogenes
• Klebsiella pneumoniae
• Kluyvera sp.

• Lactobacillus sp.
• Legionella pneumophila
• Leptospira sp.
• Leuconostoc sp.
• Listeria monocytogenes

• Mobiluncus sp.
• Moraxella catarrhalis
• Moraxella non catarrhalis
• Morganella morganii
• Mycobacterium abscessus (complexe)
• Mycobacterium avium (complexe)
• Mycobacterium gordonae
• Mycobacterium kansasii
• Mycobacterium leprae
• Mycobacterium marinum
• Mycobacterium tuberculosis (complexe)
• Mycobacterium ulcerans
• Mycoplasma pneumoniae
• Mycoplasmes génitaux

• Neisseria gonorrhoeae
• Neisseria meningitidis
• Neisseria sp. (autres espèces)
• Nocardia sp.

• Pantoea agglomerans
• Parvimonas micra
• Pasteurella multocida
• Pediococcus sp.
• Peptoniphilus harei
• Peptostreptococcus sp.
• Plesiomonas shigelloides
• Porphyromonas sp.
• Prevotella sp.
• Proteus sp.
• Providencia sp.
• Pseudomonas aeruginosa

• Rahnella aquatilis
• Rickettsia sp.
• Rothia mucilaginosa

• Salmonella enterica
• Serratia marcescens
• Shigella sp.
• Sphingomonas sp.
• Staphylococcus aureus
• Staphylococcus capitis
• Staphylococcus cohnii
• Staphylococcus epidermidis
• Staphylococcus haemolyticus
• Staphylococcus hominis
• Staphylococcus lugdunensis
• Staphylococcus saprophyticus
• Staphylococcus schleiferi
• Staphylococcus warneri
• Stenotrophomonas maltophila
• Streptobacillus moniliformis
• Streptococcus agalactiae
• Streptococcus complexe bovis/equinus
• Streptococcus dysgalactiae
• Streptococcus pneumoniae
• Streptococcus pyogenes
• Streptocoques "déficients"
• Streptocoques oraux
• Streptomyces sp.

• Terrisporobacter glycolicus
• Treponema carateum
• Treponema pallidum subsp. endemicum
• Treponema pallidum subsp. pallidum
• Treponema pallidum subsp. pertenue
• Tropheryma whipplei
• Trueperella sp.

• Vagococcus sp.
• Veillonella sp.
• Vibrio cholerae
• Vibrio non cholerae

• Weissella sp.

• Yersinia enterocolitica
• Yersinia pestis